1. Opening ~ Rescue Team
2. Welcome to the World of Pokémon!
3. Rescue Team Base
4. Pokémon Square
5. Mt. Steel
6. Boss Battle!
7. Great Canyon
8. Run Away
9. Lapis Cave
10. Mt. Blaze
11. Mt. Freeze
12. Darkness Ridge
13. Sky Tower
14. Battle! Rayquaza!
15. Farewell
16. An Adventure Over Time and Darkness Pokémon Explorers Theme
17. Wigglytuff's Guild
18. Treasure Town
19. Craggy Coast
20. Amp Plains
21. Monster House!
22. Northern Desert
23. Chasm Cave
24. Dusk Forest
25. Brine Cave
26. Hidden Land
27. Through the Sea of Time
28. Temporal Tower
29. Battle! Dialga!
30. Don't Ever Forget...
31. Pikachu's Song