1. Primal Eyes
2. Waiting for Something Awakens
3. Overture [from opera La mia verita]
4. Se Il mio amore sta vincino [Vocalise] -Eva's Aria
5. Memory I
6. Gloom and Doom
7. Theme of Mitochondoria
8. Sotto Voce
9. Arise within You
10. Main Theme [Piano Solo Version]
11. The Surface of the Water
12. Memorize of Aya and Eve
13. Out of Phase
14. Urban Noise
15. Mystery Notes
16. Influence of Deep
17. Phrase of Aya
18. Phrase of Mitochondoria
19. Theme of Aya
20. Under the Progress
21. Plosive Attack
22. Missing Perspective
23. Memory II
24. Force Trail
25. Phrase of Eve
26. Memory III
27. Matrix
28. The Omission of the World
29. Wheel of Fortune
30. Kyrie
31. Across the View
32. Femmes Fatales
33. A Piece of Remain
34. Musica Mundana
35. U.B.
36. Escape from U.B.
37. Main Theme
38. Theme of Aya [Reprise]
39. I hear a voice calling me to awaken-目覚めよと呼ぶ声が聞こえ
40. Somnia Memorias
41. Consensus
42. Someone calls me...., Someone looks for me......
43. Main Theme [Orchestral Version]
44. Influence of Deep -CM Version
45. Se Il mio amore sta vincino -CM Version
46. Forbidden Power (Theme of Aya)
47. MIST
48. Aya Again
49. Don't Move!
50. Nightmare in the Battlefield
51. Deadly Calm
52. The First Encounter
53. Tower Rendezvous
54. Metamorphosis
55. Watch Out!
56. Ambush!
57. What the Hell Happened
58. Do Something!
59. Weird Man
60. Return to the Base
61. Ghost Town
62. Hunt in Dryfield
63. Don't Shoot
64. Douglas' Blues
65. Water Tower
66. Hiding Place
67. Dryfield
68. The Bottom of the Well
69. Stealth Assault
70. Heaven sent Killer
71. The Depth of Aya's Memory
72. From Dusk Till Dawn
73. Vagrants
74. Dark Field
75. Gigantic Burner
76. Douglas' Grief
77. Voice of Mitochondria
78. Pick Up the Gauntlet
79. Abandoned Mine
80. Into the Shelter
81. Wipe Out the Creatures
82. Hold Your Breath
83. Crawling Waste Emperor
84. Chase
85. A Sigh of Relief
86. Passing Through the Sewer, You'll Find...
87. Battle on the Waterside
88. Inner Part of the Shelter
89. Innermost Part of the Shelter
90. Negative Heritage
91. Man Made Nature
92. Ark
93. Fool's Paradise
94. Mitochondria Reactor
95. Mental Deranger
96. Stalker
97. Cruelty of Eve's Fate
98. Killing Field
99. Golem Soldiers
100. Prestige of the Nation
101. Intrusion
102. Brace Yourself
103. Brahman
104. Distorted Evolution
105. Logic of the Superpower
106. Aya's Diary
107. Epilogue
108. Gentle Rays
109. Weird Man - Delete core Mix
110. Hiding Place - Comfortable Mix
111. OMAKE
